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Updating the NA12878.HiSeq bam file to be the correct bam file in the methods development qscript. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4879 348d0f76-0448-11de-a6fe-93d51630548a
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rpoplin 2010-12-20 14:53:10 +00:00
parent 8fac346ac1
commit 4ca1da1d07
1 changed files with 1 additions and 1 deletions
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2
scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala
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@ -34,7 +34,7 @@ class MethodsDevelopmentCallingPipeline extends QScript {
// Define the target datasets here
def lowPass = true
val HiSeq = new Target("NA12878.HiSeq", hg18, "hg18",
new File("/humgen/gsa-hpprojects/NA12878Collection/bams/NA12878.GA2.WGS.bwa.cleaned.bam"),
new File("/humgen/gsa-hpprojects/NA12878Collection/bams/NA12878.HiSeq.WGS.bwa.cleaned.recal.bam"),
new File("/home/radon01/depristo/work/oneOffProjects/1000GenomesProcessingPaper/wgs.v13/HiSeq.WGS.cleaned.ug.snpfiltered.indelfiltered.vcf"),
"/humgen/1kg/processing/pipeline_test_bams/whole_genome_chunked.hg18.intervals", 2.07, !lowPass)
val WEx = new Target("NA12878.WEx", hg18, "hg18",