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gatk-3.8
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quick fix 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1655 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-09-18 18:17:13 +00:00
parent b19fd4d45c
commit 4c89140f21
1 changed files with 1 additions and 1 deletions
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2
perl/1kgScripts/runPilot2Pipeline.pl
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@ -97,7 +97,7 @@ sub call {
my $doc = $_[8]; my $doc = $_[8];
my $mq = $_[9]; my $mq = $_[9];
my $cmd = "perl $sting/perl/1kgScripts/runCallingPipeline.pl -i $inputBams -o $outputHead -q $queue -snps -sting $sting -sample $sample -badsnps $badsnps -doc $doc -mq $mq"; my $cmd = "perl $sting/perl/1kgScripts/runCallingPipeline.pl -i \"$inputBams\" -o $outputHead -q $queue -snps -sting $sting -sample $sample -badsnps $badsnps -doc $doc -mq $mq";
if ($dry) { if ($dry) {
$cmd .= " -dry"; $cmd .= " -dry";
} }