diff --git a/public/java/src/org/broadinstitute/sting/utils/codecs/bcf2/BCF2Codec.java b/public/java/src/org/broadinstitute/sting/utils/codecs/bcf2/BCF2Codec.java index fc0b3c4a9..60fcb6585 100644 --- a/public/java/src/org/broadinstitute/sting/utils/codecs/bcf2/BCF2Codec.java +++ b/public/java/src/org/broadinstitute/sting/utils/codecs/bcf2/BCF2Codec.java @@ -118,6 +118,7 @@ public final class BCF2Codec implements FeatureCodec { final int sitesBlockSize = decoder.readBlockSize(inputStream); final int genotypeBlockSize = decoder.readBlockSize(inputStream); + decoder.readNextBlock(sitesBlockSize, inputStream); decodeSiteLoc(builder); final SitesInfoForDecoding info = decodeSitesExtendedInfo(builder);