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genotyper also needs to have 454 reads filtered out 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1221 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-07-10 23:19:28 +00:00
parent dea72c576e
commit 4c02607297
1 changed files with 3 additions and 1 deletions
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4
java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelGenotyperWalker.java
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@ -7,6 +7,8 @@ import org.broadinstitute.sting.gatk.refdata.ReferenceOrderedData;
import org.broadinstitute.sting.gatk.refdata.Transcript;
import org.broadinstitute.sting.gatk.refdata.rodRefSeq;
import org.broadinstitute.sting.gatk.walkers.ReadWalker;
import org.broadinstitute.sting.gatk.walkers.ReadFilters;
import org.broadinstitute.sting.gatk.filters.Platform454Filter;
import org.broadinstitute.sting.playground.utils.CircularArray;
import org.broadinstitute.sting.utils.GenomeLoc;
@ -23,7 +25,7 @@ import java.util.List;
import java.util.Set;
@ReadFilters(Platform454Filter.class)
public class IndelGenotyperWalker extends ReadWalker<Integer,Integer> {
@Argument(fullName="bed", shortName="bed", doc="BED output file name", required=true)
java.io.File bed_file;