diff --git a/public/R/src/org/broadinstitute/sting/utils/R/gsalib/R/gsa.variantqc.utils.R b/public/R/src/org/broadinstitute/sting/utils/R/gsalib/R/gsa.variantqc.utils.R index 45dacd835..748f00e28 100644 --- a/public/R/src/org/broadinstitute/sting/utils/R/gsalib/R/gsa.variantqc.utils.R +++ b/public/R/src/org/broadinstitute/sting/utils/R/gsalib/R/gsa.variantqc.utils.R @@ -1,5 +1,6 @@ library(gplots) library(ggplot2) +library(tools) # ------------------------------------------------------- # Utilities for displaying multiple plots per page @@ -59,6 +60,7 @@ closePDF <- function(outputPDF) { if ( ! is.na(outputPDF) ) { dev.off() if (exists("compactPDF")) { + print("compacting PDF") compactPDF(outputPDF) } }