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Fixed bad expected value in PedReaderUnitTest

This commit is contained in:
Mark DePristo 2011-10-06 08:16:47 -07:00
parent daa5999489
commit 4b5b9155a9
1 changed files with 2 additions and 2 deletions
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4
public/java/test/org/broadinstitute/sting/gatk/samples/PedReaderUnitTest.java
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@ -158,7 +158,7 @@ public class PedReaderUnitTest extends BaseTest {
// Quantitative trait // Quantitative trait
new PedReaderTest("OtherPhenotype", new PedReaderTest("OtherPhenotype",
Arrays.asList( Arrays.asList(
new Sample("s1", "fam1", null, null, Gender.MALE, Affection.OTHER, "1.0"), new Sample("s1", "fam1", null, null, Gender.MALE, Affection.OTHER, "1"),
new Sample("s2", "fam2", null, null, Gender.FEMALE, Affection.OTHER, "10.0")), new Sample("s2", "fam2", null, null, Gender.FEMALE, Affection.OTHER, "10.0")),
String.format("%s%n%s", String.format("%s%n%s",
"fam1 s1 0 0 1 1", "fam1 s1 0 0 1 1",
@ -188,7 +188,7 @@ public class PedReaderUnitTest extends BaseTest {
PedReader reader = new PedReader(); PedReader reader = new PedReader();
SampleDB sampleDB = new SampleDB(); SampleDB sampleDB = new SampleDB();
List<Sample> readSamples = reader.parse(myFileContents, missing, sampleDB); List<Sample> readSamples = reader.parse(myFileContents, missing, sampleDB);
Assert.assertEquals(new HashSet<Sample>(test.expectedSamples), new HashSet<Sample>(readSamples), "Parsed incorrect number of samples"); Assert.assertEquals(new HashSet<Sample>(test.expectedSamples), new HashSet<Sample>(readSamples));
} }
@Test(enabled = true, dataProvider = "readerTest") @Test(enabled = true, dataProvider = "readerTest")