diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java index adb423145..9f0585d13 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java @@ -447,6 +447,7 @@ public class UnifiedGenotyperEngine { return new VariantCallContext(vcCall, confidentlyCalled(phredScaledConfidence, PofF)); } + // A barebones entry point to the exact model when there is no tracker or stratified contexts available -- only GLs public VariantCallContext calculateGenotypes(final VariantContext vc, final GenomeLoc loc, final GenotypeLikelihoodsCalculationModel.Model model) { // initialize the data for this thread if that hasn't been done yet