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My fixes to Tribble yesterday revealed that some of the test VCFs for integration tests were actually malformed. Also, Guillermo updated the b37 dbSNP VCF and that broke some tests. Should be good for now. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5655 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2011-04-17 03:39:11 +00:00
parent 23fac043d9
commit 49ea07acce
1 changed files with 4 additions and 2 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
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@ -26,7 +26,9 @@ public class VariantEvalIntegrationTest extends WalkerTest {
" -B:eval,VCF " + validationDataLocation + "yri.trio.gatk_glftrio.intersection.annotated.filtered.chr1.vcf.gz" +
" -B:comp_genotypes,VCF " + validationDataLocation + "yri.trio.gatk.ug.head.vcf.gz";
private static String[] testsEnumerations = {root, rootGZ};
// TODO -- I can't seem to reindex this VCF using Tabix without it causing failures. Looking into it. [EB]
// private static String[] testsEnumerations = {root, rootGZ};
private static String[] testsEnumerations = {root};
@Test
public void testFundamentalsCountVariantsSNPsAndIndels() {
@ -475,7 +477,7 @@ public class VariantEvalIntegrationTest extends WalkerTest {
" -noST -noEV -ST Novelty -EV CompOverlap" +
" -o %s";
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("d866d6ca41f917dee2635fe1506ad2cc"));
WalkerTestSpec spec = new WalkerTestSpec(extraArgs,1,Arrays.asList("55a1c53bced20701c56accfc3eb782a7"));
executeTestParallel("testMultipleCompTracks",spec);
}