From 49d76014d11bd95da804a87ff494f295e2c8cf75 Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 14 Apr 2009 20:15:11 +0000
Subject: [PATCH] Commented out a debugging line

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@414 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../broadinstitute/sting/playground/utils/AlleleMetrics.java  | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java b/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java
index dc9439655..67326ebff 100755
--- a/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java
+++ b/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java
@@ -109,14 +109,16 @@ public class AlleleMetrics {
             //String called_genotype = alleleFreq.asString();
             //out.format("%s %s %c %c", hapmap_genotype, called_genotype, alleleFreq.ref, alleleFreq.alt);
 
-            System.out.printf("DBG %f %s\n", LOD_cutoff, alleleFreq.asTabularString());
+            //System.out.printf("DBG %f %s\n", LOD_cutoff, alleleFreq.asTabularString());
             if (alleleFreq.lodVsNextBest >= LOD_cutoff) {
 
+                /*
                 System.out.printf("DBG %f %f %f %f\n",
                                         hapmap_q,
                                         alleleFreq.qhat,
                                         alleleFreq.qstar,
                                         alleleFreq.lodVsNextBest);
+                */
 
                 // Calculate genotyping performance - did we get the correct genotype of the N+1 choices?
                 //if (hapmap_q != -1 && hapmap_q == alleleFreq.qstar) {