diff --git a/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java b/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java index dc9439655..67326ebff 100755 --- a/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java +++ b/java/src/org/broadinstitute/sting/playground/utils/AlleleMetrics.java @@ -109,14 +109,16 @@ public class AlleleMetrics { //String called_genotype = alleleFreq.asString(); //out.format("%s %s %c %c", hapmap_genotype, called_genotype, alleleFreq.ref, alleleFreq.alt); - System.out.printf("DBG %f %s\n", LOD_cutoff, alleleFreq.asTabularString()); + //System.out.printf("DBG %f %s\n", LOD_cutoff, alleleFreq.asTabularString()); if (alleleFreq.lodVsNextBest >= LOD_cutoff) { + /* System.out.printf("DBG %f %f %f %f\n", hapmap_q, alleleFreq.qhat, alleleFreq.qstar, alleleFreq.lodVsNextBest); + */ // Calculate genotyping performance - did we get the correct genotype of the N+1 choices? //if (hapmap_q != -1 && hapmap_q == alleleFreq.qstar) {