zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Jared: feel free to change or revert, but until we move over to UG version... 

Only print out positions with at least one non-ref call


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1830 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-10-14 17:08:57 +00:00
parent f5a2e6dd50
commit 49af5269e5
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
java/src/org/broadinstitute/sting/playground/gatk/walkers/MultiSampleCaller.java
View File

@ -290,7 +290,7 @@ public class MultiSampleCaller extends LocusWalker<MultiSampleCaller.MultiSample
public String reduce(MultiSampleCallResult record, String sum)
{
if (record != null)
if (record != null && record.n_ref != record.EM_N)
{
discovery_output_file.printf(record.toString() + "\n");
}