From 4979dcc9a7315b73557b530895c136c6adee27be Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 27 Aug 2010 01:19:37 +0000
Subject: [PATCH] Finishing up the playground cleanup (for now)

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4135 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../gatk/examples/papergenotyper/GATKPaperGenotyper.java      | 2 +-
 .../sting/gatk/examples/papergenotyper/SimpleCall.java        | 2 +-
 .../{playground => }/gatk/walkers/qc/CountPairsWalker.java    | 4 ++--
 3 files changed, 4 insertions(+), 4 deletions(-)
 rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/qc/CountPairsWalker.java (97%)

diff --git a/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/GATKPaperGenotyper.java b/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/GATKPaperGenotyper.java
index 0c6b17c43..186ce7daa 100644
--- a/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/GATKPaperGenotyper.java
+++ b/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/GATKPaperGenotyper.java
@@ -23,7 +23,7 @@
  * THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  */
 
-package org.broadinstitute.sting.playground.gatk.walkers.papergenotyper;
+package org.broadinstitute.sting.gatk.examples.papergenotyper;
 
 import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
 import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
diff --git a/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/SimpleCall.java b/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/SimpleCall.java
index 1b4772817..e1ba8379c 100644
--- a/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/SimpleCall.java
+++ b/java/src/org/broadinstitute/sting/gatk/examples/papergenotyper/SimpleCall.java
@@ -1,4 +1,4 @@
-package org.broadinstitute.sting.playground.gatk.walkers.papergenotyper;
+package org.broadinstitute.sting.gatk.examples.papergenotyper;
 
 import org.broadinstitute.sting.utils.GenomeLoc;
 
diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/qc/CountPairsWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountPairsWalker.java
similarity index 97%
rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/qc/CountPairsWalker.java
rename to java/src/org/broadinstitute/sting/gatk/walkers/qc/CountPairsWalker.java
index f2145411d..cece04fcf 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/qc/CountPairsWalker.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountPairsWalker.java
@@ -1,5 +1,5 @@
 /*
- * Copyright (c) 2010 The Broad Institute
+ * Copyright (c) 2010.
  *
  * Permission is hereby granted, free of charge, to any person
  * obtaining a copy of this software and associated documentation
@@ -23,7 +23,7 @@
  * THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  */
 
-package org.broadinstitute.sting.playground.gatk.walkers.qc;
+package org.broadinstitute.sting.gatk.walkers.qc;
 
 import org.broadinstitute.sting.gatk.walkers.ReadPairWalker;
 import org.broadinstitute.sting.utils.collections.ExpandingArrayList;