zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Correctly initialize the optional SnpEff rod binding in VariantAnnotator using 

RodBinding.makeUnbound()
This commit is contained in:
David Roazen 2011-08-09 16:30:08 -04:00
parent a42f90db11
commit 480e7a7984
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
View File

@ -58,7 +58,7 @@ public class VariantAnnotator extends RodWalker<Integer, Integer> {
@ArgumentCollection protected StandardVariantContextInputArgumentCollection variantCollection = new StandardVariantContextInputArgumentCollection(); @ArgumentCollection protected StandardVariantContextInputArgumentCollection variantCollection = new StandardVariantContextInputArgumentCollection();
@Input(fullName="snpEffFile", shortName = "snpEffFile", doc="SnpEff file", required=false) @Input(fullName="snpEffFile", shortName = "snpEffFile", doc="SnpEff file", required=false)
public RodBinding<SnpEffFeature> snpEffFile; public RodBinding<SnpEffFeature> snpEffFile = RodBinding.makeUnbound(SnpEffFeature.class);
/** /**
* A dbSNP VCF file from which to annotate. * A dbSNP VCF file from which to annotate.