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Correctly initialize the optional SnpEff rod binding in VariantAnnotator using 

RodBinding.makeUnbound()
This commit is contained in:
David Roazen 2011-08-09 16:30:08 -04:00
parent a42f90db11
commit 480e7a7984
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/VariantAnnotator.java
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@ -58,7 +58,7 @@ public class VariantAnnotator extends RodWalker<Integer, Integer> {
@ArgumentCollection protected StandardVariantContextInputArgumentCollection variantCollection = new StandardVariantContextInputArgumentCollection();
@Input(fullName="snpEffFile", shortName = "snpEffFile", doc="SnpEff file", required=false)
public RodBinding<SnpEffFeature> snpEffFile;
public RodBinding<SnpEffFeature> snpEffFile = RodBinding.makeUnbound(SnpEffFeature.class);
/**
* A dbSNP VCF file from which to annotate.