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Oops, move the covariates over too

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Eric Banks 2013-01-07 15:47:25 -05:00
parent 35699a8376
commit 47d030a52d
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ContextCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/Covariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/Covariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/CycleCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/CycleCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ExperimentalCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ExperimentalCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/QualityScoreCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/QualityScoreCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ReadGroupCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/ReadGroupCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/RepeatLengthCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/RepeatLengthCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/RequiredCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/RequiredCovariate.java
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public/java/src/org/broadinstitute/sting/utils/recalibration/covariates/StandardCovariate.java → protected/java/src/org/broadinstitute/sting/utils/recalibration/covariates/StandardCovariate.java
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