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trivial cleanup 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3736 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2010-07-08 04:42:32 +00:00
parent b7a3d1e61f
commit 47a42b1507
1 changed files with 12 additions and 12 deletions
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24
java/src/org/broadinstitute/sting/utils/sam/AlignmentUtils.java
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@ -426,18 +426,18 @@ public class AlignmentUtils {
int length = ce.getLength(); int length = ce.getLength();
switch( ce.getOperator() ) { switch( ce.getOperator() ) {
case M: case M:
readIndex += length; readIndex += length;
refIndex += length; refIndex += length;
break; break;
case S: case S:
readIndex += length; readIndex += length;
break; break;
case N: case N:
refIndex += length; refIndex += length;
break; break;
default: default:
break; break;
} }
} }