From 47a42b15070d8b2a9c09a4b58185003fe0bd2f28 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 8 Jul 2010 04:42:32 +0000
Subject: [PATCH] trivial cleanup

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3736 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/sam/AlignmentUtils.java       | 24 +++++++++----------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/utils/sam/AlignmentUtils.java b/java/src/org/broadinstitute/sting/utils/sam/AlignmentUtils.java
index c3d16d502..66ff08c3c 100644
--- a/java/src/org/broadinstitute/sting/utils/sam/AlignmentUtils.java
+++ b/java/src/org/broadinstitute/sting/utils/sam/AlignmentUtils.java
@@ -426,18 +426,18 @@ public class AlignmentUtils {
             int length = ce.getLength();
             
             switch( ce.getOperator() ) {
-            case M:
-                readIndex += length;
-                refIndex += length;
-                break;
-            case S:
-                readIndex += length;
-                break;
-            case N:
-                refIndex += length;
-                break;
-            default:
-                break;
+                case M:
+                    readIndex += length;
+                    refIndex += length;
+                    break;
+                case S:
+                    readIndex += length;
+                    break;
+                case N:
+                    refIndex += length;
+                    break;
+                default:
+                    break;
             }
         }