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Don't run these tests if not GAKT lite

This commit is contained in:
Eric Banks 2012-10-31 22:56:38 -04:00
parent f8af8a2355
commit 47a0f5859e
1 changed files with 5 additions and 5 deletions
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10
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperLiteIntegrationTest.java
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@ -1,14 +1,11 @@
package org.broadinstitute.sting.gatk.walkers.genotyper;
import org.broadinstitute.sting.WalkerTest;
import org.broadinstitute.sting.gatk.GenomeAnalysisEngine;
import org.broadinstitute.sting.utils.exceptions.UserException;
import org.broadinstitute.sting.utils.classloader.GATKLiteUtils;
import org.testng.SkipException;
import org.testng.annotations.Test;
import java.io.File;
import java.util.Arrays;
import java.util.Collections;
import java.util.List;
// ********************************************************************************** //
// Note that this class also serves as an integration test for the VariantAnnotator! //
@ -26,6 +23,9 @@ public class UnifiedGenotyperLiteIntegrationTest extends WalkerTest {
@Test
public void testContaminationDownsampling() {
if ( !GATKLiteUtils.isGATKLite() )
throw new SkipException("Only want to test for GATK lite");
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
baseCommand + " -I " + validationDataLocation + "NA12878.1kg.p2.chr1_10mb_11_mb.SLX.bam -o %s -L 1:10,000,000-10,010,000", 1,
Arrays.asList("9addd225a985178339a0c49dc5fdc220"));