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Fixed a missing method implementation in these two files. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1459 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2009-08-25 21:21:58 +00:00
parent f12ea3a27e
commit 478f426727
2 changed files with 6 additions and 6 deletions
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4
java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VECHomopolymer.java
View File

@ -111,7 +111,7 @@ public class VECHomopolymer implements VariantExclusionCriterion {
exclude = checkOne || checkTwo || checkThree || checkFour;
}
public boolean isExcludable() {
return exclude;
public double inclusionProbability() {
return exclude ? 0.0 : 1.0;
}
}

8
java/src/org/broadinstitute/sting/playground/gatk/walkers/variants/VECOnOffGenotypeRatio.java
View File

@ -64,12 +64,12 @@ public class VECOnOffGenotypeRatio implements VariantExclusionCriterion { // ext
exclude = ratio < threshold;
}
public boolean useZeroQualityReads() { return false; }
public boolean isExcludable() {
return exclude;
public double inclusionProbability() {
return exclude ? 0.0 : 1.0;
}
public boolean useZeroQualityReads() { return false; }
public String getStudyHeader() {
return "OnOffGenotype("+threshold+")\tOnRatio";
}