From 477502338f3247bda2454a5df0f753ad8fd5d10b Mon Sep 17 00:00:00 2001 From: ebanks Date: Thu, 23 Jul 2009 19:59:51 +0000 Subject: [PATCH] moved major indel cleaning pieces to core (yippee!) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1301 348d0f76-0448-11de-a6fe-93d51630548a --- .../{playground => }/gatk/walkers/indels/CleanedReadInjector.java | 0 .../{playground => }/gatk/walkers/indels/IndelIntervalWalker.java | 0 .../gatk/walkers/indels/IntervalCleanerWalker.java | 0 .../gatk/walkers/indels/IntervalMergerWalker.java | 0 .../gatk/walkers/indels/MismatchIntervalWalker.java | 0 .../{playground => }/gatk/walkers/indels/SNPClusterWalker.java | 0 6 files changed, 0 insertions(+), 0 deletions(-) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/CleanedReadInjector.java (100%) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/IndelIntervalWalker.java (100%) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/IntervalCleanerWalker.java (100%) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/IntervalMergerWalker.java (100%) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/MismatchIntervalWalker.java (100%) rename java/src/org/broadinstitute/sting/{playground => }/gatk/walkers/indels/SNPClusterWalker.java (100%) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CleanedReadInjector.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/CleanedReadInjector.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CleanedReadInjector.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/CleanedReadInjector.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelIntervalWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelIntervalWalker.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalMergerWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalMergerWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalMergerWalker.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalMergerWalker.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/MismatchIntervalWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/MismatchIntervalWalker.java diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/SNPClusterWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/SNPClusterWalker.java similarity index 100% rename from java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/SNPClusterWalker.java rename to java/src/org/broadinstitute/sting/gatk/walkers/indels/SNPClusterWalker.java