moved major indel cleaning pieces to core (yippee!)

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git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1301 348d0f76-0448-11de-a6fe-93d51630548a

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ebanks 2009-07-23 19:59:51 +00:00

parent 4efe26c59a

commit 477502338f

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CleanedReadInjector.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/CleanedReadInjector.java

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelIntervalWalker.java

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalMergerWalker.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalMergerWalker.java

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/MismatchIntervalWalker.java

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java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/SNPClusterWalker.java → java/src/org/broadinstitute/sting/gatk/walkers/indels/SNPClusterWalker.java

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