diff --git a/pom.xml b/pom.xml
index 6490280d1..728c772db 100644
--- a/pom.xml
+++ b/pom.xml
@@ -13,7 +13,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-root</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>public/gatk-root</relativePath>
     </parent>
 
diff --git a/protected/gatk-package-distribution/pom.xml b/protected/gatk-package-distribution/pom.xml
index dfc00c219..205671988 100644
--- a/protected/gatk-package-distribution/pom.xml
+++ b/protected/gatk-package-distribution/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/protected/gatk-queue-extensions-distribution/pom.xml b/protected/gatk-queue-extensions-distribution/pom.xml
index 6d484c8f7..a296ef8b7 100644
--- a/protected/gatk-queue-extensions-distribution/pom.xml
+++ b/protected/gatk-queue-extensions-distribution/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/protected/gatk-queue-package-distribution/pom.xml b/protected/gatk-queue-package-distribution/pom.xml
index 510aa339b..1a60db514 100644
--- a/protected/gatk-queue-package-distribution/pom.xml
+++ b/protected/gatk-queue-package-distribution/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/protected/gatk-tools-protected/pom.xml b/protected/gatk-tools-protected/pom.xml
index 6142872c8..f910067f2 100644
--- a/protected/gatk-tools-protected/pom.xml
+++ b/protected/gatk-tools-protected/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/protected/pom.xml b/protected/pom.xml
index edfd9e7b3..2bef5b158 100644
--- a/protected/pom.xml
+++ b/protected/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-root</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../public/gatk-root</relativePath>
     </parent>
 
diff --git a/public/VectorPairHMM/pom.xml b/public/VectorPairHMM/pom.xml
index ccbc99eef..b0e75eb1d 100644
--- a/public/VectorPairHMM/pom.xml
+++ b/public/VectorPairHMM/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-root</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../../public/gatk-root</relativePath>
     </parent>
 
diff --git a/public/external-example/pom.xml b/public/external-example/pom.xml
index 02eaa9800..17919f365 100644
--- a/public/external-example/pom.xml
+++ b/public/external-example/pom.xml
@@ -9,7 +9,7 @@
     <name>External Example</name>
 
     <properties>
-        <gatk.version>3.5-SNAPSHOT</gatk.version>
+        <gatk.version>3.6-SNAPSHOT</gatk.version>
         <!--
         gatk.basedir property must point to your checkout of GATK/GATK until we can get all the
         dependencies out of the committed gatk repo and into central.
diff --git a/public/gatk-engine/pom.xml b/public/gatk-engine/pom.xml
index 167507649..d317c7e78 100644
--- a/public/gatk-engine/pom.xml
+++ b/public/gatk-engine/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gatk-queue-extensions-generator/pom.xml b/public/gatk-queue-extensions-generator/pom.xml
index bd0bc3567..9b841ef50 100644
--- a/public/gatk-queue-extensions-generator/pom.xml
+++ b/public/gatk-queue-extensions-generator/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gatk-queue-extensions-public/pom.xml b/public/gatk-queue-extensions-public/pom.xml
index f2caa4466..b9ed812aa 100644
--- a/public/gatk-queue-extensions-public/pom.xml
+++ b/public/gatk-queue-extensions-public/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gatk-queue/pom.xml b/public/gatk-queue/pom.xml
index 26db30418..2d98f745e 100644
--- a/public/gatk-queue/pom.xml
+++ b/public/gatk-queue/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gatk-root/pom.xml b/public/gatk-root/pom.xml
index 9f1c9d464..07280ea4d 100644
--- a/public/gatk-root/pom.xml
+++ b/public/gatk-root/pom.xml
@@ -12,7 +12,7 @@
 
     <groupId>org.broadinstitute.gatk</groupId>
     <artifactId>gatk-root</artifactId>
-    <version>3.5-SNAPSHOT</version>
+    <version>3.6-SNAPSHOT</version>
     <packaging>pom</packaging>
     <name>GATK Root</name>
 
diff --git a/public/gatk-tools-public/pom.xml b/public/gatk-tools-public/pom.xml
index 347839ec7..63332a3d0 100644
--- a/public/gatk-tools-public/pom.xml
+++ b/public/gatk-tools-public/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gatk-utils/pom.xml b/public/gatk-utils/pom.xml
index 25241183c..cbb4cfa61 100644
--- a/public/gatk-utils/pom.xml
+++ b/public/gatk-utils/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/gsalib/pom.xml b/public/gsalib/pom.xml
index 5546ac79c..4925afd36 100644
--- a/public/gsalib/pom.xml
+++ b/public/gsalib/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-aggregator</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../..</relativePath>
     </parent>
 
diff --git a/public/package-tests/pom.xml b/public/package-tests/pom.xml
index 2f2e74940..39ec25c8b 100644
--- a/public/package-tests/pom.xml
+++ b/public/package-tests/pom.xml
@@ -9,7 +9,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-root</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>../gatk-root</relativePath>
     </parent>
 
diff --git a/public/pom.xml b/public/pom.xml
index a166255a1..e5b08e554 100644
--- a/public/pom.xml
+++ b/public/pom.xml
@@ -5,7 +5,7 @@
     <parent>
         <groupId>org.broadinstitute.gatk</groupId>
         <artifactId>gatk-root</artifactId>
-        <version>3.5-SNAPSHOT</version>
+        <version>3.6-SNAPSHOT</version>
         <relativePath>gatk-root</relativePath>
     </parent>