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Update read metrics per shard rather than locus

This commit is contained in:
Joel Thibault 2012-10-19 14:29:02 -04:00
parent 637e0cf151
commit 45f64425a3
1 changed files with 2 additions and 1 deletions
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3
public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseActiveRegions.java
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@ -104,10 +104,11 @@ public class TraverseActiveRegions <M,T> extends TraversalEngine<M,T,ActiveRegio
prevLoc = location;
updateCumulativeMetrics(dataProvider.getShard());
printProgress(locus.getLocation());
}
updateCumulativeMetrics(dataProvider.getShard());
// Take the individual isActive calls and integrate them into contiguous active regions and
// add these blocks of work to the work queue
// band-pass filter the list of isActive probabilities and turn into active regions