From 44acc358b75c1b2d8dfc7858b391717763b8891c Mon Sep 17 00:00:00 2001
From: jmaguire <jmaguire@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 25 Mar 2009 15:18:10 +0000
Subject: [PATCH] Add a "notes" member to the AlleleFreqencyEstimate, e.g. for
 hapmap metadata.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@188 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/utils/AlleleFrequencyEstimate.java    | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/playground/utils/AlleleFrequencyEstimate.java b/java/src/org/broadinstitute/sting/playground/utils/AlleleFrequencyEstimate.java
index 75d5fd60d..46e49cbdb 100755
--- a/java/src/org/broadinstitute/sting/playground/utils/AlleleFrequencyEstimate.java
+++ b/java/src/org/broadinstitute/sting/playground/utils/AlleleFrequencyEstimate.java
@@ -12,6 +12,7 @@ public class AlleleFrequencyEstimate {
     public double qstar;
     public double LOD;
     public int depth;
+    public String notes;
 
     public double getQstar()
     {
@@ -33,17 +34,19 @@ public class AlleleFrequencyEstimate {
         this.qstar = qstar;
         this.LOD = LOD;
         this.depth = depth;
+        this.notes = "";
     }
 
     public String asTabularString() {
-        return String.format("RESULT %s %c %c %f %f %f %d\n",
+        return String.format("RESULT %s %c %c %f %f %f %d %s\n",
 	                                        location,
 	                                        ref,
 	                                        alt,
 	                                        qhat,
 	                                        qstar,
 	                                        LOD,
-	                                        depth);
+	                                        depth, 
+                                            notes);
     }
 
     public String asString() {