diff --git a/public/scala/test/org/broadinstitute/sting/queue/pipeline/PipelineTest.scala b/public/scala/test/org/broadinstitute/sting/queue/pipeline/PipelineTest.scala
index dc3cfd9d4..c2c956118 100644
--- a/public/scala/test/org/broadinstitute/sting/queue/pipeline/PipelineTest.scala
+++ b/public/scala/test/org/broadinstitute/sting/queue/pipeline/PipelineTest.scala
@@ -31,6 +31,7 @@ import org.broadinstitute.sting.commandline.CommandLineProgram
 import java.util.Date
 import java.text.SimpleDateFormat
 import org.broadinstitute.sting.BaseTest
+import org.broadinstitute.sting.MD5DB
 import org.broadinstitute.sting.queue.QCommandLine
 import org.broadinstitute.sting.queue.util.{Logging, ProcessController}
 import java.io.{FileNotFoundException, File}
@@ -105,7 +106,7 @@ object PipelineTest extends BaseTest with Logging {
   private def assertMatchingMD5s(name: String, fileMD5s: Traversable[(File, String)], parameterize: Boolean) {
     var failed = 0
     for ((file, expectedMD5) <- fileMD5s) {
-      val calculatedMD5 = BaseTest.testFileMD5(name, file, expectedMD5, parameterize)
+      val calculatedMD5 = MD5DB.testFileMD5(name, file, expectedMD5, parameterize)
       if (!parameterize && expectedMD5 != "" && expectedMD5 != calculatedMD5)
         failed += 1
     }
diff --git a/public/testdata/exampleBAM.simple.bai b/public/testdata/exampleBAM.simple.bai
new file mode 100644
index 000000000..2d8268b1d
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diff --git a/public/testdata/exampleBAM.simple.bam b/public/testdata/exampleBAM.simple.bam
new file mode 100644
index 000000000..c3eb7ae7b
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