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Removed a debugging println that was accidentally checked in 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1348 348d0f76-0448-11de-a6fe-93d51630548a
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andrewk 2009-07-30 22:23:27 +00:00
parent 845488ff94
commit 44673b2dce
1 changed files with 0 additions and 1 deletions
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java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java
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@ -156,7 +156,6 @@ public class VariantEvalWalker extends RefWalker<Integer, Integer> {
//if ( eval!=null ) System.out.printf("Eval: %f %d %b%n", eval.getVariationConfidence(), minDiscoveryQ, eval.getVariationConfidence() < minDiscoveryQ); //if ( eval!=null ) System.out.printf("Eval: %f %d %b%n", eval.getVariationConfidence(), minDiscoveryQ, eval.getVariationConfidence() < minDiscoveryQ);
if ( eval != null ) { if ( eval != null ) {
out.println(eval);
if ( evalContainsGenotypes ) { if ( evalContainsGenotypes ) {
// Genotyping - use best vs. next best lod // Genotyping - use best vs. next best lod
if ( eval.getConsensusConfidence() < minDiscoveryQ ) eval = null; if ( eval.getConsensusConfidence() < minDiscoveryQ ) eval = null;