diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java index b4f1fe89c..ec68f1c32 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/varianteval/VariantEvalWalker.java @@ -156,7 +156,6 @@ public class VariantEvalWalker extends RefWalker { //if ( eval!=null ) System.out.printf("Eval: %f %d %b%n", eval.getVariationConfidence(), minDiscoveryQ, eval.getVariationConfidence() < minDiscoveryQ); if ( eval != null ) { - out.println(eval); if ( evalContainsGenotypes ) { // Genotyping - use best vs. next best lod if ( eval.getConsensusConfidence() < minDiscoveryQ ) eval = null;