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Pass array of ref bases to callExtendedLocus() 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3213 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2010-04-20 17:41:13 +00:00
parent 5d2fab93f4
commit 4437456bb5
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
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@ -189,7 +189,7 @@ public class UnifiedGenotyperEngine {
if ( stratifiedContexts == null ) if ( stratifiedContexts == null )
return null; return null;
call = gcm.get().callExtendedLocus(tracker, ref, rawContext.getLocation(), stratifiedContexts); call = gcm.get().callExtendedLocus(tracker, refContext.getBasesAtLocus(-1), rawContext.getLocation(), stratifiedContexts);
} else { } else {