diff --git a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/utils/Utils.scala b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/utils/Utils.scala index ff94744ee..1189b376c 100644 --- a/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/utils/Utils.scala +++ b/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/utils/Utils.scala @@ -37,7 +37,6 @@ object Utils { /** * Returns the number of contigs in the BAM file header. */ - def getNumberOfContigs(bamFile: File): Int = { val samReader = new SAMFileReader(new File(bamFile)) samReader.getFileHeader.getSequenceDictionary.getSequences.size() @@ -46,7 +45,6 @@ object Utils { /** * Check if there are multiple samples in a BAM file */ - def hasMultipleSamples(readGroups: java.util.List[SAMReadGroupRecord]): Boolean = { var sample: String = "" for (r <- readGroups) {