zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Updated docs

This commit is contained in:
Eric Banks 2011-11-28 08:59:48 -05:00
parent e60272975a
commit 436b4dc855
1 changed files with 4 additions and 3 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

7
public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java
View File

@ -50,11 +50,12 @@ public class UnifiedGenotyperEngine {
public static final String LOW_QUAL_FILTER_NAME = "LowQual"; public static final String LOW_QUAL_FILTER_NAME = "LowQual";
public enum OUTPUT_MODE { public enum OUTPUT_MODE {
/** the default */ /** produces calls only at variant sites */
EMIT_VARIANTS_ONLY, EMIT_VARIANTS_ONLY,
/** include confident reference sites */ /** produces calls at variant sites and confident reference sites */
EMIT_ALL_CONFIDENT_SITES, EMIT_ALL_CONFIDENT_SITES,
/** any callable site regardless of confidence */ /** produces calls at any callable site regardless of confidence; this argument is intended for point
* mutations (SNPs) only and while some indel calls may be produced they are by no means comprehensive */
EMIT_ALL_SITES EMIT_ALL_SITES
} }