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Oops, forgot to update integration tests 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3431 348d0f76-0448-11de-a6fe-93d51630548a
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ebanks 2010-05-25 20:37:45 +00:00
parent 772f558ae0
commit 434e920da9
1 changed files with 1 additions and 1 deletions
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2
java/test/org/broadinstitute/sting/gatk/walkers/indels/IndelRealignerIntegrationTest.java
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@ -10,7 +10,7 @@ public class IndelRealignerIntegrationTest extends WalkerTest {
@Test
public void testRealigner() {
String[] md5lod5 = {"67c3fc25e9d192cc5fbfd48ade0efc84", "86778f92b0fa6aa7c26e651c8c1eb320"};
String[] md5lod5 = {"96edef86cea95f312ee8295b38227eb8", "d4d8ff567b614729ab8c52bd7d6bef48"};
WalkerTestSpec spec1 = new WalkerTestSpec(
"-T IndelRealigner -noPG -LOD 5 -maxConsensuses 100 -greedy 100 -R " + oneKGLocation + "reference/human_b36_both.fasta -I " + validationDataLocation + "NA12878.chrom1.SLX.SRP000032.2009_06.bam -L 1:10023800-10332350 -compress 1 -targetIntervals " + validationDataLocation + "cleaner.test.intervals -O %s -snps %s",
2,