From 4318f75910e1aba55c651e38d7b46294dbdb3fff Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 18 Sep 2009 21:04:25 +0000
Subject: [PATCH] tiny cleanup

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1660 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/refdata/RodGeliText.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/RodGeliText.java b/java/src/org/broadinstitute/sting/gatk/refdata/RodGeliText.java
index 43e9dbe30..73e048213 100755
--- a/java/src/org/broadinstitute/sting/gatk/refdata/RodGeliText.java
+++ b/java/src/org/broadinstitute/sting/gatk/refdata/RodGeliText.java
@@ -69,7 +69,7 @@ public class RodGeliText extends BasicReferenceOrderedDatum implements Variation
             depth = Integer.valueOf(parts[3]);
             maxMappingQuality = Integer.valueOf(parts[4]);
 
-            System.out.printf("%s%n", parts[5]);
+            // UPPER case and sort
             char[] x = parts[5].toUpperCase().toCharArray();
             Arrays.sort(x);
             bestGenotype = new String(x);