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At least 2 minutes must pass before a status message is printed, further stabilizing time estimates

This commit is contained in:
Mark DePristo 2011-09-07 13:13:07 -04:00
parent 7e9e20fed0
commit 430da23446
1 changed files with 3 additions and 1 deletions
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4
public/java/src/org/broadinstitute/sting/gatk/traversals/TraversalEngine.java
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@ -121,6 +121,7 @@ public abstract class TraversalEngine<M,T,WalkerType extends Walker<M,T>,Provide
private static final int PRINT_PROGRESS_CHECK_FREQUENCY_IN_CYCLES = 1000; private static final int PRINT_PROGRESS_CHECK_FREQUENCY_IN_CYCLES = 1000;
private int printProgressCheckCounter = 0; private int printProgressCheckCounter = 0;
private long lastProgressPrintTime = -1; // When was the last time we printed progress log? private long lastProgressPrintTime = -1; // When was the last time we printed progress log?
private long MIN_ELAPSED_TIME_BEFORE_FIRST_PROGRESS = 120 * 1000; // in milliseconds
private long PROGRESS_PRINT_FREQUENCY = 10 * 1000; // in milliseconds private long PROGRESS_PRINT_FREQUENCY = 10 * 1000; // in milliseconds
private final double TWO_HOURS_IN_SECONDS = 2.0 * 60.0 * 60.0; private final double TWO_HOURS_IN_SECONDS = 2.0 * 60.0 * 60.0;
private final double TWELVE_HOURS_IN_SECONDS = 12.0 * 60.0 * 60.0; private final double TWELVE_HOURS_IN_SECONDS = 12.0 * 60.0 * 60.0;
@ -229,7 +230,8 @@ public abstract class TraversalEngine<M,T,WalkerType extends Walker<M,T>,Provide
* @return true if the maximum interval (in millisecs) has passed since the last printing * @return true if the maximum interval (in millisecs) has passed since the last printing
*/ */
private boolean maxElapsedIntervalForPrinting(final long curTime, long lastPrintTime, long printFreq) { private boolean maxElapsedIntervalForPrinting(final long curTime, long lastPrintTime, long printFreq) {
return (curTime - lastPrintTime) > printFreq; long elapsed = curTime - lastPrintTime;
return elapsed > printFreq && elapsed > MIN_ELAPSED_TIME_BEFORE_FIRST_PROGRESS;
} }
/** /**