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Removed the confusionMatrix column (of *course* this is a confusion matrix... what else would it be?!). 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3365 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2010-05-14 21:55:37 +00:00
parent 95b29f608b
commit 4235164359
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/playground/gatk/walkers/diagnostics/ComputeConfusionMatrix.java
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@ -149,14 +149,14 @@ public class ComputeConfusionMatrix extends LocusWalker<Integer, Integer> {
contextualNorms.put(contextualKey, contextualCount + confusionCounts.get(key)); contextualNorms.put(contextualKey, contextualCount + confusionCounts.get(key));
} }
out.printf("confusionMatrix\tcontext\talt\tref\tcounts\ttotal\tfraction\n"); out.printf("context\talt\tref\tcounts\ttotal\tfraction\n");
for (String key : keys) { for (String key : keys) {
String[] fields = key.split(":"); String[] fields = key.split(":");
String contextualKey = String.format("%s:%s", fields[0], fields[1]); String contextualKey = String.format("%s:%s", fields[0], fields[1]);
out.printf( out.printf(
"confusionMatrix\t%s\t%s\t%s\t%d\t%d\t%f\n", "%s\t%s\t%s\t%d\t%d\t%f\n",
fields[0], fields[0].isEmpty() ? "." : fields[0],
fields[1], fields[1],
fields[2], fields[2],
confusionCounts.get(key), confusionCounts.get(key),