From 42351643596ae375164dac6b0d0493a85ef1beb1 Mon Sep 17 00:00:00 2001 From: kiran Date: Fri, 14 May 2010 21:55:37 +0000 Subject: [PATCH] Removed the confusionMatrix column (of *course* this is a confusion matrix... what else would it be?!). git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3365 348d0f76-0448-11de-a6fe-93d51630548a --- .../gatk/walkers/diagnostics/ComputeConfusionMatrix.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/diagnostics/ComputeConfusionMatrix.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/diagnostics/ComputeConfusionMatrix.java index d7eecd620..5d9aa0a23 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/diagnostics/ComputeConfusionMatrix.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/diagnostics/ComputeConfusionMatrix.java @@ -149,14 +149,14 @@ public class ComputeConfusionMatrix extends LocusWalker { contextualNorms.put(contextualKey, contextualCount + confusionCounts.get(key)); } - out.printf("confusionMatrix\tcontext\talt\tref\tcounts\ttotal\tfraction\n"); + out.printf("context\talt\tref\tcounts\ttotal\tfraction\n"); for (String key : keys) { String[] fields = key.split(":"); String contextualKey = String.format("%s:%s", fields[0], fields[1]); out.printf( - "confusionMatrix\t%s\t%s\t%s\t%d\t%d\t%f\n", - fields[0], + "%s\t%s\t%s\t%d\t%d\t%f\n", + fields[0].isEmpty() ? "." : fields[0], fields[1], fields[2], confusionCounts.get(key),