zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

stop printing sw matrix and other debug infoant 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@171 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2009-03-24 18:15:52 +00:00
parent 8ea8a74fbf
commit 4222016bf5
1 changed files with 5 additions and 5 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

10
java/src/org/broadinstitute/sting/playground/indels/SWPairwiseAlignment.java
View File

@ -70,7 +70,7 @@ public class SWPairwiseAlignment {
}
}
print(sw,a,b);
// print(sw,a,b);
PrimitivePair.Int p = new PrimitivePair.Int();
int maxscore = 0;
@ -88,7 +88,7 @@ public class SWPairwiseAlignment {
}
}
System.out.println("\ni="+p.first+"; j="+p.second);
// System.out.println("\ni="+p.first+"; j="+p.second);
// p holds the position we start backtracking from; we will be assembling a cigar in the backwards order
@ -176,7 +176,7 @@ public class SWPairwiseAlignment {
}
}
print(sw,a,b);
// print(sw,a,b);
PrimitivePair.Int p = new PrimitivePair.Int();
double maxscore = 0.0;
@ -194,7 +194,7 @@ public class SWPairwiseAlignment {
}
}
System.out.println("\ni="+p.first+"; j="+p.second);
// System.out.println("\ni="+p.first+"; j="+p.second);
// p holds the position we start backtracking from; we will be assembling a cigar in the backwards order
@ -317,7 +317,7 @@ public void align3(String a, String b) {
}
}
print(sw,a,b);
// print(sw,a,b);
PrimitivePair.Int p = new PrimitivePair.Int();
double maxscore = 0.0;