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fixing unified genotyper test for change: VCF output now emits no calls as ./. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1865 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-10-16 19:38:58 +00:00
parent 85a4fbc256
commit 41a95cb3f0
1 changed files with 1 additions and 1 deletions
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2
java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -43,7 +43,7 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
public void testMultiSamplePilot1() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
"-T UnifiedGenotyper -R /broad/1KG/reference/human_b36_both.fasta -I /humgen/gsa-scr1/GATK_Data/Validation_Data/low_coverage_CEU.chr1.10k-11k.bam -varout %s -L 1:10,000,000-10,001,000 -bm empirical -gm EM_POINT_ESTIMATE -lod 5", 1,
Arrays.asList("3c806bb0649a889c242a430f1d5bb7f9"));
Arrays.asList("4b8d13283157735957d60cdfa492ab90"));
executeTest("testMultiSamplePilot1", spec);
}