Large number of bugfixes for bugs encountered while trying to scale up preQC database generation to all reprocessed data:

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- Better support for missing data, esp. in eval files.
- More R-compatible date formatting.
- Some of the AlignmentSummaryMetrics were only for first of pair.
- Some of the InsertSizeMetrics retrieved data for only one pairing orientation.
- More/better command-line customization.

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Matt Hanna 2011-06-30 18:03:59 -04:00

parent 843f604be2

commit 419bf259ee

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