Fixed reference (via busted symlink) /broad/1KG

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4245 348d0f76-0448-11de-a6fe-93d51630548a
2010-09-09 20:34:51 +00:00 · 2010-09-09 20:34:51 +00:00 · 4183e8805a
parent dfdd0b69a9
commit 4183e8805a
1 changed files with 1 additions and 1 deletions
--- a/java/test/org/broadinstitute/sting/alignment/AlignerIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/alignment/AlignerIntegrationTest.java
@ -16,7 +16,7 @@ public class AlignerIntegrationTest extends WalkerTest {
    public void testBasicAlignment() {
        String md5 = "c6d95d8ae707e78fefdaa7375f130995";
        WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(
-                "-R /humgen/gsa-scr1/GATK_Data/bwa/human_b36_both.fasta" +
+                        "-R " + b36KGReference +
                        " -T Align" +
                        " -I " + validationDataLocation + "NA12878_Pilot1_20.trimmed.unmapped.bam" +
                        " -ob %s",