From 41687d5237a27aa42ff693606532d90ee82eb1fe Mon Sep 17 00:00:00 2001
From: kiran <kiran@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 11 Jun 2009 21:16:10 +0000
Subject: [PATCH] Added accessors for the prior probabilities.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@994 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/utils/GenotypeLikelihoods.java      | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/java/src/org/broadinstitute/sting/playground/utils/GenotypeLikelihoods.java b/java/src/org/broadinstitute/sting/playground/utils/GenotypeLikelihoods.java
index 2053e31e8..e55f4396e 100644
--- a/java/src/org/broadinstitute/sting/playground/utils/GenotypeLikelihoods.java
+++ b/java/src/org/broadinstitute/sting/playground/utils/GenotypeLikelihoods.java
@@ -98,6 +98,15 @@ public class GenotypeLikelihoods {
         offNextBestBasePriors.put("TT", 0.505);
     }
 
+    public double getHomRefPrior() { return priorHomRef; }
+    public void setHomRefPrior(double priorHomRef) { this.priorHomRef = priorHomRef; }
+
+    public double getHetPrior() { return priorHet; }
+    public void setHetPrior(double priorHet) { this.priorHet = priorHet; }
+
+    public double getHomVarPrior() { return priorHomVar; }
+    public void setHomVarPrior(double priorHomVar) { this.priorHomVar = priorHomVar; }
+
     public void add(char ref, char read, byte qual) 
 	{ 
         for (int i = 0; i < genotypes.length; i++)