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Added accessors for the prior probabilities. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@994 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kiran 2009-06-11 21:16:10 +00:00
parent 12dd18cdba
commit 41687d5237
1 changed files with 9 additions and 0 deletions
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9
java/src/org/broadinstitute/sting/playground/utils/GenotypeLikelihoods.java
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@ -98,6 +98,15 @@ public class GenotypeLikelihoods {
offNextBestBasePriors.put("TT", 0.505);
}
public double getHomRefPrior() { return priorHomRef; }
public void setHomRefPrior(double priorHomRef) { this.priorHomRef = priorHomRef; }
public double getHetPrior() { return priorHet; }
public void setHetPrior(double priorHet) { this.priorHet = priorHet; }
public double getHomVarPrior() { return priorHomVar; }
public void setHomVarPrior(double priorHomVar) { this.priorHomVar = priorHomVar; }
public void add(char ref, char read, byte qual)
{
for (int i = 0; i < genotypes.length; i++)