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Refactoring of prior commit: better handling of unnamed package within the help system. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2297 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2009-12-09 20:12:35 +00:00
parent 1d2151adcf
commit 408f6f3dee
1 changed files with 13 additions and 3 deletions
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16
java/src/org/broadinstitute/sting/gatk/WalkerManager.java
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@ -79,7 +79,8 @@ public class WalkerManager extends PluginManager<Walker> {
public Map<String,Collection<Class<? extends Walker>>> getWalkerNamesByPackage() { public Map<String,Collection<Class<? extends Walker>>> getWalkerNamesByPackage() {
Map<String,Collection<Class<? extends Walker>>> walkersByPackage = new HashMap<String,Collection<Class<? extends Walker>>>(); Map<String,Collection<Class<? extends Walker>>> walkersByPackage = new HashMap<String,Collection<Class<? extends Walker>>>();
for(Class<? extends Walker> walker: pluginsByName.values()) { for(Class<? extends Walker> walker: pluginsByName.values()) {
String walkerPackage = walker.getPackage() != null ? walker.getPackage().getName() : "<unpackaged>"; // Extract the name for the package; if the walker is in the unnamed package, use the empty string
String walkerPackage = walker.getPackage() != null ? walker.getPackage().getName() : "";
if(!walkersByPackage.containsKey(walkerPackage)) if(!walkersByPackage.containsKey(walkerPackage))
walkersByPackage.put(walkerPackage,new ArrayList<Class<? extends Walker>>()); walkersByPackage.put(walkerPackage,new ArrayList<Class<? extends Walker>>());
walkersByPackage.get(walkerPackage).add(walker); walkersByPackage.get(walkerPackage).add(walker);
@ -93,8 +94,17 @@ public class WalkerManager extends PluginManager<Walker> {
* @return A suitable display name for the package. * @return A suitable display name for the package.
*/ */
public String getPackageDisplayName(String packageName) { public String getPackageDisplayName(String packageName) {
String specifiedDisplayName = helpText.getProperty(packageName+"."+ DisplayNameTaglet.NAME); // Try to find an override for the display name of this package.
return specifiedDisplayName != null ? specifiedDisplayName : packageName.substring(packageName.lastIndexOf('.')+1); String displayName = helpText.getProperty(packageName+"."+ DisplayNameTaglet.NAME);
// If no override exists...
if(displayName == null) {
// ...try to compute the override from the text of the package name, while accounting for
// unpackaged walkers.
displayName = packageName.substring(packageName.lastIndexOf('.')+1);
if(displayName.trim().equals("")) displayName = "<unpackaged>";
}
return displayName;
} }
/** /**