From 4082f4677e77b4477f0bf2e47a717f6fed883fcc Mon Sep 17 00:00:00 2001
From: alecw <alecw@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 19 Nov 2009 17:24:28 +0000
Subject: [PATCH] Picard-private with classes for reading Picard dbSNP binary
 file

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2086 348d0f76-0448-11de-a6fe-93d51630548a
---
 packages/PicardPrivate.xml                          |  12 ++++++++++++
 ...parts-1109.jar => picard-private-parts-1119.jar} | Bin
 ...parts-1109.xml => picard-private-parts-1119.xml} |   0
 3 files changed, 12 insertions(+)
 rename settings/repository/edu.mit.broad/{picard-private-parts-1109.jar => picard-private-parts-1119.jar} (100%)
 rename settings/repository/edu.mit.broad/{picard-private-parts-1109.xml => picard-private-parts-1119.xml} (100%)

diff --git a/packages/PicardPrivate.xml b/packages/PicardPrivate.xml
index 7ea16595b..816a1fccd 100644
--- a/packages/PicardPrivate.xml
+++ b/packages/PicardPrivate.xml
@@ -12,5 +12,17 @@
     <class>edu.mit.broad.picard.util.IntervalTree</class>
     <class>edu.mit.broad.picard.util.OverlapDetector</class>
     <class>edu.mit.broad.picard.util.PasteParser</class>
+    <class>edu.mit.broad.picard.variation.KnownVariantCodecV2</class>
+    <class>edu.mit.broad.picard.variation.KnownVariantCodec</class>
+    <class>edu.mit.broad.picard.variation.KnownVariantFileHeader</class>
+    <class>edu.mit.broad.picard.variation.GenerateDbSnpFile</class>
+    <class>edu.mit.broad.picard.variation.VariantType</class>
+    <class>edu.mit.broad.picard.variation.ObsoleteKnownVariantCodecV1</class>
+    <class>edu.mit.broad.picard.variation.AbstractKnownVariantCodec</class>
+    <class>edu.mit.broad.picard.variation.KnownVariantIterator</class>
+    <class>edu.mit.broad.picard.variation.KnownVariantCodecFactory</class>
+    <class>edu.mit.broad.picard.variation.KnownVariant</class>
+    <class>edu.mit.broad.picard.variation.DbSnpFileReader</class>
+    <class>edu.mit.broad.picard.variation.DbSnpFileGenerator</class>
   </dependencies>
 </package>
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1109.jar b/settings/repository/edu.mit.broad/picard-private-parts-1119.jar
similarity index 100%
rename from settings/repository/edu.mit.broad/picard-private-parts-1109.jar
rename to settings/repository/edu.mit.broad/picard-private-parts-1119.jar
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-1109.xml b/settings/repository/edu.mit.broad/picard-private-parts-1119.xml
similarity index 100%
rename from settings/repository/edu.mit.broad/picard-private-parts-1109.xml
rename to settings/repository/edu.mit.broad/picard-private-parts-1119.xml