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corrected logical expression in MateSameStrandFilter 

Signed-off-by: David Roazen <droazen@broadinstitute.org>
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seru71 2015-02-10 14:11:05 +01:00 committed by David Roazen
parent 893e8ff9c4
commit 3ee0311fdb
1 changed files with 1 additions and 1 deletions
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public/gatk-engine/src/main/java/org/broadinstitute/gatk/engine/filters/MateSameStrandFilter.java
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@ -37,6 +37,6 @@ public class MateSameStrandFilter extends ReadFilter {
public boolean filterOut(SAMRecord read) { public boolean filterOut(SAMRecord read) {
return (! read.getReadPairedFlag() ) || read.getMateUnmappedFlag() || read.getDuplicateReadFlag() || return (! read.getReadPairedFlag() ) || read.getMateUnmappedFlag() || read.getDuplicateReadFlag() ||
read.getReadFailsVendorQualityCheckFlag() || read.getMateNegativeStrandFlag() != read.getReadNegativeStrandFlag(); read.getReadFailsVendorQualityCheckFlag() || (read.getMateNegativeStrandFlag() == read.getReadNegativeStrandFlag());
} }
} }