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Remove DepthOfCoverage.java because it is no longer public 

- Move Pileup.java and PrintReads.java to their new homes
This commit is contained in:
Joel Thibault 2013-01-10 11:44:24 -05:00
parent 4a8466783a
commit 3e52ce5fa8
1 changed files with 2 additions and 3 deletions
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5
public/packages/GATKEngine.xml
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@ -53,11 +53,10 @@
<file name="public/testdata/exampleFASTA.fasta.fai" /> <file name="public/testdata/exampleFASTA.fasta.fai" />
<file name="public/testdata/exampleFASTA.dict" /> <file name="public/testdata/exampleFASTA.dict" />
<!-- GATK sample code and build scripts --> <!-- GATK sample code and build scripts -->
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverage.java" /> <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/Pileup.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/Pileup.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReads.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLoci.java" /> <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLoci.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java" /> <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileup.java" /> <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileup.java" />
<file name="public/java/src/org/broadinstitute/sting/gatk/walkers/readutils/PrintReads.java" />
</resources> </resources>
</package> </package>