diff --git a/public/packages/GATKEngine.xml b/public/packages/GATKEngine.xml
index 27d2afa47..42b3a4d6e 100644
--- a/public/packages/GATKEngine.xml
+++ b/public/packages/GATKEngine.xml
@@ -53,11 +53,10 @@
     <file name="public/testdata/exampleFASTA.fasta.fai" />
     <file name="public/testdata/exampleFASTA.dict" />
     <!-- GATK sample code and build scripts -->
-    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DepthOfCoverage.java" />
-    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/Pileup.java" />
-    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/PrintReads.java" />
+    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/Pileup.java" />
     <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLoci.java" />
     <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReads.java" />
     <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileup.java" />
+    <file name="public/java/src/org/broadinstitute/sting/gatk/walkers/readutils/PrintReads.java" />
   </resources>
 </package>