From 3e0e7aad2da0c34672e0552dec0d7820b6bbb1bf Mon Sep 17 00:00:00 2001
From: rpoplin <rpoplin@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Fri, 19 Feb 2010 15:26:22 +0000
Subject: [PATCH] Removing debug statement. oops.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2858 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../recalibration/RecalibrationWalkersIntegrationTest.java       | 1 -
 1 file changed, 1 deletion(-)

diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
index 8bafd1f64..ee73a87c8 100755
--- a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
+++ b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java
@@ -182,7 +182,6 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest {
                             " -I " + bam +
                             " -L 1:10,000,000-10,200,000" +
                             " -standard" +
-                            " --ignore_nocall_colorspace" +
                             " --solid_recal_mode SET_Q_ZERO" +
                             " -recalFile %s",
                     1, // just one output file