diff --git a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java index 8bafd1f64..ee73a87c8 100755 --- a/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java +++ b/java/test/org/broadinstitute/sting/gatk/walkers/recalibration/RecalibrationWalkersIntegrationTest.java @@ -182,7 +182,6 @@ public class RecalibrationWalkersIntegrationTest extends WalkerTest { " -I " + bam + " -L 1:10,000,000-10,200,000" + " -standard" + - " --ignore_nocall_colorspace" + " --solid_recal_mode SET_Q_ZERO" + " -recalFile %s", 1, // just one output file