diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java
index 49c131ce2..a96262c96 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/IndelGenotypeLikelihoodsCalculationModel.java
@@ -150,14 +150,12 @@ public class IndelGenotypeLikelihoodsCalculationModel extends GenotypeLikelihood
                                 // case 1: current insertion is prefix of indel in hash map
                                 consensusIndelStrings.put(s, cnt + 1);
                                 foundKey = true;
-                                break;
                             } else if (indelString.startsWith(s)) {
                                 // case 2: indel stored in hash table is prefix of current insertion
                                 // In this case, new bases are new key.
                                 consensusIndelStrings.remove(s);
                                 consensusIndelStrings.put(indelString, cnt + 1);
                                 foundKey = true;
-                                break;
                             }
                         }
                         if (!foundKey)
@@ -172,7 +170,6 @@ public class IndelGenotypeLikelihoodsCalculationModel extends GenotypeLikelihood
                                 // case 1: current insertion is suffix of indel in hash map
                                 consensusIndelStrings.put(s, cnt + 1);
                                 foundKey = true;
-                                break;
                             } else if (indelString.endsWith(s)) {
                                 // case 2: indel stored in hash table is suffix of current insertion
                                 // In this case, new bases are new key.
@@ -180,7 +177,6 @@ public class IndelGenotypeLikelihoodsCalculationModel extends GenotypeLikelihood
                                 consensusIndelStrings.remove(s);
                                 consensusIndelStrings.put(indelString, cnt + 1);
                                 foundKey = true;
-                                break;
                             }
                         }
                         if (!foundKey)