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Remove debug print statement

This commit is contained in:
sathibault 2013-06-20 08:28:58 -05:00
parent 336050ab71
commit 3db8908ae8
1 changed files with 0 additions and 1 deletions
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protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java
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@ -250,7 +250,6 @@ public class LikelihoodCalculationEngine {
final double[] likelihoods = batchPairHMM.batchGetResult(); final double[] likelihoods = batchPairHMM.batchGetResult();
for( int jjj = 0; jjj < numHaplotypes; jjj++ ) { for( int jjj = 0; jjj < numHaplotypes; jjj++ ) {
final Haplotype haplotype = haplotypes.get(jjj); final Haplotype haplotype = haplotypes.get(jjj);
System.err.println(Integer.toString(jjj) + ": " + Double.toString(likelihoods[jjj]));
if ( haplotype.isNonReference() ) if ( haplotype.isNonReference() )
bestNonReflog10L = Math.max(bestNonReflog10L, likelihoods[jjj]); bestNonReflog10L = Math.max(bestNonReflog10L, likelihoods[jjj]);
else else